From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv for interesting papers from the SCGB community and beyond.

Neural Interactome: Interactive Simulation of a Neuronal System

Jimin Kim, William Leahy, and Eli Shlizerman

bioRxiv posted 26 November 2017

[Abstract] [PDF]

 

Decoding of neural data using cohomological learning

Erik Rybakken, Nils Baas, and Benjamin Dunn

bioRxiv posted 20 November 2017

[Abstract] [PDF]

 

Recording neural activity in unrestrained animals with 3D tracking two photon microscopy

Doycho Karagyozov, Mirna Mihovilovic Skanata, Amanda Lesar, and Marc Gershow

bioRxiv posted 19 November 2017

[Abstract] [PDF]

 

Biologically plausible mechanisms underlying motor response correction during reward-based decision-making

Jung H. Lee

bioRxiv posted 18 November 2017

[Abstract] [PDF]

 

Discovery of a new song mode in Drosophila reveals hidden structure in the sensory and neural drivers of behavior

Jan Clemens, Pip Coen, Frederic Roemschied, Talmo Pereira, David Mazumder, Diego Pacheco, and Mala Murthy

bioRxiv posted 17 November 2017

[Abstract] [PDF]

 

Organization of Neural Population Code in Mouse Visual System

Kathleen Esfahany, Isabel Siergiej, Yuan Zhao, and Il Memming Park

bioRxiv posted 16 November 2017

[Abstract] [PDF]

 

Hyperacuity Bayesian methods to enhance temporal resolution of two-photon recording of the complex spikes in the cerebellar Purkinje cells

Huu Hoang, Masa-aki Sato, Mitsuo Kawato, and Keisuke Toyama

bioRxiv posted 16 November 2017

[Abstract] [PDF]

 

The Brain Dynamics Toolbox for Matlab

Stewart Heitmann, Matthew J. Aburn, and Michael Breakspear

bioRxiv posted 14 November 2017

[Abstract] [PDF]

 

Circuit-based models of shared variability in cortical networks

Chengcheng Huang, Douglas Ruff, Ryan Pyle, Robert Rosenbaum, Marlene Cohen, and Brent David Doiron

bioRxiv posted 11 November 2017

[Abstract] [PDF]

 

Automatic sorting system for large calcium imaging data

Takashi Takekawa, Hirotaka Asai, Noriaki Ohkawa, Masanori Nomoto, Reiko Okubo-Suzuki, Khaled Ghandour, Masaaki Sato, Yasunori Hayashi, Kaoru Inokuchi, and Tomoki Fukai

bioRxiv posted 9 November 2017

[Abstract] [PDF]

 

Chunking sequence information by mutually predicting recurrent neural networks

Toshitake Asabuki, Naoki Hiratani, and Tomoki Fukai

bioRxiv posted 9 November 2017

[Abstract] [PDF]

 

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

Nikhil Parthasarathy, Eleanor Batty, William Falcon, Thomas Rutten, Mohit Rajpal, E. J. Chichilnisky, and Liam Paninski

bioRxiv posted 8 November 2017

[Abstract] [PDF]

 

Temporal coupling of field potentials and action potentials in the neocortex

Brendon O Watson, Mingxin Ding, and Gyorgy Buzsaki

bioRxiv posted 6 November 2017

[Abstract] [PDF]

 

A theory of multineuronal dimensionality, dynamics and measurement

Peiran Gao, Eric Trautmann, Byron M. Yu, Gopal Santhanam, Stephen Ryu, Krishna Shenoy, and Surya Ganguli

bioRxiv posted 5 November 2017

[Abstract] [PDF]

 

Running reduces firing but improves coding in rodent higher-order visual cortex

Amelia J. Christensen and Jonathan W Pillow

bioRxiv posted 4 November 2017

[Abstract] [PDF]

 

Two-stage adaptation of inhibition mediates predictive sensitization in the retina

David B Kastner, Georgia Panagiotakos, Yusuf Ozuysal, and Stephen A Baccus

bioRxiv posted 4 November 2017

[Abstract] [PDF]

 

E/I balance enables adaptation to coordinate a neural population for a stable sensory representation

Gabrielle J Gutierrez and Sophie Deneve

bioRxiv posted 3 November 2017

[Abstract] [PDF]

 

Scalable Bayesian inference for high-dimensional neural receptive fields

Mikio Aoi and Jonathan W. Pillow

bioRxiv posted 1 November 2017

[Abstract] [PDF]

 

Firing pattern classification and phenotyping in a knowledge base of hippocampal neuron types

Alexander O. Komendantov, Siva Venkadesh, Christopher L. Rees, Diek W. Wheeler, David J. Hamilton, and Giorgio A. Ascoli

bioRxiv posted 31 October 2017

[Abstract] [PDF]

 

Unsupervised discovery of demixed, low-dimensional neural dynamics across multiple timescales through tensor components analysis

Alex H Williams, Tony Hyun Kim, Forea Wang, Saurabh Vyas, Stephen I Ryu, Krishna V Shenoy, Mark Schnitzer, Tamara G Kolda, and Surya Ganguli

bioRxiv posted 30 October 2017

[Abstract] [PDF]

 

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