From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv and arXiv for interesting papers from the SCGB community and beyond.

Electrode pooling: How to boost the yield of switchable silicon probes for neuronal recordings

Kyu Hyun Lee, Yu-Li Ni, and Markus Meister

bioRxiv posted 26 November 2019

[Abstract] [PDF]

 

Face familiarity detection with complex synapses

Li Ji-An, Fabio Stefanini, Marcus K Benna, and Stefano Fusi

bioRxiv posted 25 November 2019

[Abstract] [PDF]

 

Behavioral signatures of a developing neural code

Lilach Avitan, Zac Pujic, Jan Moelter, Michael McCullough, Shuyu Zhu, Biao Sun, Ann-Elin Myhre, and Geoffrey Goodhill

bioRxiv posted 27 November 2019

[Abstract] [PDF]

 

A common model explaining flexible decision making, grid fields and cognitive control

Payam Piray and Nathaniel D. Daw

bioRxiv posted 27 November 2019

[Abstract] [PDF]

 

Training deep neural density estimators to identify mechanistic models of neural dynamics

Pedro J. Goncalves, Jan-Matthis Lueckmann, Michael Deistler, Marcel Nonnenmacher, Kaan Öcal, Giacomo Bassetto, Chaitanya Chintaluri, William F. Podlaski, Sara A. Haddad, Tim P. Vogels, David S. Greenberg, and Jakob H. Macke

bioRxiv posted 18 November 2019

[Abstract] [PDF]

 

Time-dependent processing of correlated signals between visual cortical areas improves neuronal population encoding in a sensory discrimination task

Jackson E.T. Smith and Andrew J Parker

bioRxiv posted 16 November 2019

[Abstract] [PDF]

 

A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology

Ziqiang Wei, Bei-Jung Lin, Tsai-Wen Chen, Kayvon Daie, Karel Svoboda, and Shaul Druckmann

bioRxiv posted 15 November 2019

[Abstract] [PDF]

 

Spiking Recurrent Networks as a Model to Probe Neuronal Timescales Specific to Working Memory

Robert Kim and Terrence J Sejnowski

bioRxiv posted 15 November 2019

[Abstract] [PDF]

 

Hippocampal ensembles represent sequential relationships among discrete nonspatial events

Babak Shahbaba, Lingge LI, Forest Agostinelli, Mansi Saraf, Gabriel A Elias, Pierre F Baldi, and Norbert J Fortin

bioRxiv posted 13 November 2019

[Abstract] [PDF]

 

Cell-type specific asynchronous modulation of PKA by dopamine during reward based learning

Suk Joon Lee, Bart Lodder, Yao Chen, Tommaso Patriarchi, Lin Tian, and Bernardo Sabatini

bioRxiv posted 12 November 2019

[Abstract] [PDF]

 

Correlations in population dynamics in multi-component networks

Sonica Saraf and Lai-Sang Young

bioRxiv posted 12 November 2019

[Abstract] [PDF]

 

Interrogating theoretical models of neural computation with deep inference

Sean R Bittner, Agostina Palmigiano, Alex T Piet, Chunyu A Duan, Carlos D Brody, Kenneth D Miller, and John P Cunningham

bioRxiv posted 11 November 2019

[Abstract] [PDF]

 

Cerebellar neurodynamics during motor planning predict decision timing and outcome on single-trial level

Qian Lin, Magdalena Helmreich, Friederike Schlumm, Jennifer Li, Drew Robson, Florian Engert, Alexander Schier, Tobias Noebauer, and Alipasha Vaziri

bioRxiv posted 11 November 2019

[Abstract] [PDF]

 

Spatial encoding in the visual pathway arises in cortex and depends on active navigation

Mika Diamanti, Charu Bai Reddy, Sylvia Schroeder, Kenneth D Harris, Aman B Saleem, and Matteo Carandini

bioRxiv posted 7 November 2019

[Abstract] [PDF]

 

Poisson balanced spiking networks

Camille E Rullán Buxó and Jonathan W Pillow

bioRxiv posted 9 November 2019

[Abstract] [PDF]

 

The impact of reporter kinetics on the interpretation of data gathered with fluorescent reporters

Bernardo Sabatini

bioRxiv posted 7 November 2019

[Abstract] [PDF]

 

Application of the hierarchical bootstrap to multi-level data in neuroscience

Varun Saravanan, Gordon J Berman, and Samuel J. Sober

bioRxiv posted 28 October 2019

[Abstract] [PDF]

 

Data architecture and visualization for a large-scale neuroscience collaboration

The International Brain Laboratory, Niccolo Bonacchi, Gaelle Chapuis, Anne K. Churchland, Kenneth D Harris, Cyrille Rossant, Maho Sasaki, Shan Shen, Nicholas A Steinmetz, Edgar Y Walker, Olivier Winter, and Miles Wells

bioRxiv posted 2 November 2019

[Abstract] [PDF]

 

A probabilistic framework for decoding behavior from in vivo calcium imaging data

Guillaume Etter, Frédéric Manseau, and Sylvain Williams

bioRxiv posted 1 November 2019

[Abstract] [PDF]

 

Dimensionality, information and learning in prefrontal cortex

Ramon Bartolo-Orozco, Richard Saunders, Andrew Mitz, and Bruno B. Averbeck

bioRxiv posted 29 October 2019

[Abstract] [PDF]

 

Recurrent interactions in local cortical circuits

Simon P Peron, Bettina Voelcker, Ravi Pancholi, Jason Wittenbach, H. Freyja Olafsdottir, Jeremy Freeman, and Karel Svoboda

bioRxiv posted 29 October 2019

[Abstract] [PDF]

 

Dopamine neurons change their tuning according to courtship context in singing birds

Vikram Gadagkar, Pavel A. Puzerey, and Jesse H Goldberg

bioRxiv posted 29 October 2019

[Abstract] [PDF]

 

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