From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv and arXiv for interesting papers from the SCGB community and beyond.

Distractibility and impulsivity neural states are distinct from attention states and modulate the implementation of attention

Julian Amengual, Fabio Di Bello, Sameh Ben Hadj Hassen, and Suliann Ben Hamed

bioRxiv posted 30 November 2021

[Abstract] [PDF]

 

Quasi-universal scaling in mouse-brain neuronal activity stems from edge-of-instability critical dynamics

Guillermo B. Morales, Serena Di Santo, and Miguel A Muñoz

bioRxiv posted 23 November 2021

[Abstract] [PDF]

 

A structured scaffold underlies activity in the hippocampus

Dounia Mulders, Man Yi Yim, Jae Sung Lee, Albert K. Lee, Thibaud Taillefumier, and Ila Fiete

bioRxiv posted 22 November 2021

[Abstract] [PDF]

 

A deep learning framework for inference of single-trial neural population activity from calcium imaging with sub-frame temporal resolution

Feng Zhu, Harrison A Grier, Raghav Tandon, Changjia Cai, Andrea Giovannucci, Matthew T Kaufman, and Chethan Pandarinath

bioRxiv posted 21 November 2021

[Abstract] [PDF]

 

Multi-timescale biological learning algorithms train spiking neuronal network motor control

Daniel Hasegan, Matt Deible, Christopher Earl, David D’Onofrio, Hananel Hazan, Haroon Anwar, and Samuel A Neymotin

bioRxiv posted 20 November 2021

[Abstract] [PDF]

 

Passive Exposure Sparsifies Neural Activity in the Primary Visual Cortex

Jan Homann, Hyewon Kim, David W Tank, and Michael J Berry, II

bioRxiv posted 20 November 2021

[Abstract] [PDF]

 

A neural mechanism for detecting object motion during self-motion

HyungGoo Kim, Dora Angelaki, and Gregory DeAngelis

bioRxiv posted 19 November 2021

[Abstract] [PDF]

 

Complementary population codes in the dorsal and ventral hippocampus during associative learning

Jeremy S Biane, Max A Ladow, Fabio Stefanini, Sayi P Boddu, Austin Fan, Shazreh Hassan, Naz Dundar, Daniel L Apodaca-Montano, Nicholas I Woods, and Mazen A Khierbek

bioRxiv posted 18 November 2021

[Abstract] [PDF]

 

Optimal information loading into working memory in prefrontal cortex

Jake P Stroud, Kei Watanabe, Takafumi Suzuki, Mark G Stokes, and Máté Lengyel

bioRxiv posted 17 November 2021

[Abstract] [PDF]

 

Reliable population utility signal from diverse economic value coding in orbitofrontal neurons

Simone Ferrari-Toniolo and Wolfram Schultz

bioRxiv posted 13 November 2021

[Abstract] [PDF]

 

PatchWarp: Corrections of non-uniform image distortions in two-photon calcium imaging data by patchwork affine transformations

Ryoma Hattori and Takaki Komiyama

bioRxiv posted 13 November 2021

[Abstract] [PDF]

 

Recurrent neural circuits overcome partial inactivation by compensation and re-learning

Colin J Bredenberg, Cristina Savin, and Roozbeh Kiani

bioRxiv posted 13 November 2021

[Abstract] [PDF]

 

Neural Population Geometry Reveals the Role of Stochasticity in Robust Perception

Joel Dapello, Jenelle Feather, Hang Le, Tiago Marques, David D. Cox, Josh H. McDermott, James J. DiCarlo, SueYeon Chung

arXiv posted 12 November 2021

[Abstract]

 

Contribution of linear and nonlinear mechanisms to predictive motion estimation

Belle Liu, Arthur Hong, Fred Rieke, and Michael B. Manookin

bioRxiv posted 11 November 2021

[Abstract] [PDF]

 

Compositional Restricted Boltzmann Machines Unveil the Brain-Wide Organization of Neural Assemblies

Thijs L van der Plas, Jérôme Tubiana, Guillaume Le Goc, Geoffrey Migault, Michael Kunst, Herwig Baier, Volker Bormuth, Bernhard Englitz, and Georges Debrégeas

bioRxiv posted 11 November 2021

[Abstract] [PDF]

 

Parametric control of flexible timing through low-dimensional neural manifolds

Manuel Beiran, Nicolas Meirhaeghe, Hansem Sohn, Mehrdad Jazayeri, and Srdjan Ostojic

bioRxiv posted 10 November 2021

[Abstract] [PDF]

 

Fast and sensitive GCaMP calcium indicators for imaging neural populations

Loren Looger, Yan Zhang, Martón Rózsa, Yajie Liang, Daniel Bushey, Ziqiang Wei, Jihong Zheng, Daniel Reep, Gerald Joey Broussard, Arthur Tsang, Getahun Tsegaye, Sujatha Narayan, Christopher J Obara, Jing-Xuan Lim, Ronak Patel, Rongwei Zhang, Misha B Ahrens, Glenn C Turner, Samuel S Wang, Wyatt Korff, Eric R Schreiter, Karel Svoboda, Jeremy P Hasseman, and Ilya Kolb

bioRxiv posted 8 November 2021

[Abstract] [PDF]

 

Three-dimensional spike localization and improved motion correction for Neuropixels recordings

Julien Boussard, Erdem Varol, Hyun Dong Lee, Nishchal Dethe, and Liam Paninski

bioRxiv posted 8 November 2021

[Abstract] [PDF]

 

3D reconstruction of cell nuclei in a full Drosophila brain

Shang Mu, Szi-chieh Yu, Nicholas L. Turner, Claire E. McKellar, Sven Dorkenwald, Forrest Collman, Selden Koolman, Merlin Moore, Sarah Morejohn, Ben Silverman, Kyle Willie, Ryan Willie, Doug Bland, Austin Burke, Zoe Ashwood, Kyle Luther, Manuel Castro, Oluwaseun Ogedengbe, William Silversmith, Jingpeng Wu, Akhilesh Halageri, Thomas Macrina, Nico Kemnitz, Mala Murthy, and H. Sebastian Seung

bioRxiv posted 4 November 2021

[Abstract] [PDF]

 

Explaining heterogeneity in medial entorhinal cortex with task-driven neural networks

Aran Nayebi, Alexander Attinger, Malcolm G. Campbell, Kiah Hardcastle, Isabel I.C. Low, Caitlin S. Mallory, Gabriel C. Mel, Ben Sorscher, Alex H. Williams, Surya Ganguli, Lisa M. Giocomo, and Daniel L.K. Yamins

bioRxiv posted 2 November 2021

[Abstract] [PDF]

 

Multi-area recordings and optogenetics in the awake, behaving marmoset

Patrick Jendritza, Frederike J Klein, and Pascal Fries

bioRxiv posted 2 November 2021

[Abstract] [PDF]

 

Diverse operant control of different motor cortex populations during learning

Nuria Vendrell-Llopis, Ching Fang, Albert J Qu, Rui M Costa, and Jose M Carmena

bioRxiv posted 2 November 2021

[Abstract] [PDF]

 

Flexible circuit mechanisms for context-dependent song sequencing

Frederic A Roemschied, Diego Armando Pacheco Pinedo, Elise C Ireland, Xinping Li, Max J Aragon, Rich K Pang, and Mala Murthy

bioRxiv posted 2 November 2021

[Abstract] [PDF]

 

Invariant neural subspaces maintained by feedback modulation

Laura Bella Naumann, Joram Keijser, and Henning Sprekeler

bioRxiv posted 1 November 2021

[Abstract] [PDF]

 

Tracking neural activity from the same cells during the entire adult life of mice

Siyuan Zhao, Xin Tang, Sebastian Partarrieu, Shiqi Guo, Ren Liu, Jaeyong Lee, Zuwan Lin, and Jia Liu

bioRxiv posted 1 November 2021

[Abstract] [PDF]

 

Fragmented Spatial Maps: State Abstraction and Efficient Planning from Surprisal

Mirko Klukas, Sugandha Sharma, Yilun Du, Tomas Lozano-Perez, Leslie Pack Kaelbling, and Ila Fiete

bioRxiv posted 1 November 2021

[Abstract] [PDF]

 

Decoding grasp and speech signals from the cortical grasp circuit in a tetraplegic human

Sarah Kim Wandelt, Spencer Kellis, David Bjanes, Kelsie Pejsa, Brian Lee, Charles Liu, and Richard A. Andersen

bioRxiv posted 1 November 2021

[Abstract] [PDF]

 

Generalized Shape Metrics on Neural Representations

Alex H. Williams, Erin Kunz, Simon Kornblith, Scott W. Linderman

arXiv posted  27 October 2021

[Abstract]

 

 

 

 

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