From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
Reward signaling in a recurrent circuit of dopaminergic neurons and Kenyon cells
Radostina Lyutova, Maximilian Pfeuffer, Dennis Segebarth, Jens Habenstein, Mareike Selcho, Christian Wegener, Andreas S Thum, and Dennis Pauls
bioRxiv posted 28 June 2018
Evidence that recurrent circuits are critical to the ventral stream’s execution of core object recognition behavior
Kohitij Kar, Jonas Kubilius, Kailyn M Schmidt, Elias B Issa, and James J DiCarlo
bioRxiv posted 26 June 2018
Inhibitory and excitatory populations in parietal cortex are equally selective for decision outcome in both novices and experts
Farzaneh Najafi, Gamaleldin F Elsayed, , John Cunningham, and Anne K Churchland
bioRxiv posted 22 June 2018
A Moment-Based Maximum Entropy Model for Fitting Higher-Order Interactions in Neural Data
Alex Cayco-Gajic, Joel Zylberberg, and Eric Shea-Brown
bioRxiv posted 22 June 2018
Coherent chaos in a recurrent neural network with structured connectivity
Itamar Daniel Landau and Haim Sompolinsky
bioRxiv posted 19 June 2018
Cortical state fluctuations during sensory decision making
Elina A K Jacobs, Nicholas A Steinmetz, Matteo Carandini, and Kenneth D Harris
bioRxiv posted 16 June 2018
Principles Underlying the Input-Dependent Formation and Organization of Memories
Juliane Herpich and Christian Tetzlaff
bioRxiv posted 15 June 2018
Semi-Analytic Nonparametric Bayesian Inference for Spike-Spike Neuronal Connectivity
Luca Ambrogioni, Patrick Ebel, Max Hinne, Umut Guclu, Marcel van Gerven, and Eric Maris
bioRxiv posted 15 June 2018
Characterization of nonlinear receptive fields of visual neurons by convolutional neural network
Jumpei Ukita, Takashi Yoshida, and Kenichi Ohki
bioRxiv posted 15 June 2018
Nominally non-responsive frontal and sensory cortical cells encode task-relevant variables via ensemble consensus-building
Michele N Insanally, Ioana Carcea, Rachel E Field, Chris C Rodgers, Brian DePasquale, Kanaka Rajan, Michael R DeWeese, Badr F Albanna, and Robert C Froemke
bioRxiv posted 14 June 2018
A circuit motif in the songbird basal ganglia for computing predicted performance quality
Ruidong Chen, Pavel A Puzerey, Andrea C Roeser, Tori Riccelli, Archana Podury, Kamal Maher, Alexander Farhang, and Jesse H Goldberg
bioRxiv posted 14 June 2018
Representational structure or task structure? Bias in neural representational similarity analysis and a Bayesian method for reducing bias
Ming Bo Cai, Nicolas W Schuck, Jonathan W Pillow, and Yael Niv
bioRxiv posted 14 June 2018
Optimizing sequential decisions in the drift-diffusion model
Khanh P Nguyen, Kresimir Josic, and Zachary Kilpatrick
bioRxiv posted 11 June 2018
Neuronal thresholds and correlations in the peripheral vestibular system during rotation discrimination
Courtney Garcia, Sheng Liu, Jean Laurens, Gregory DeAngelis, David Dickman, and Dora Angelaki
bioRxiv posted 11 June 2018
A cerebellar role in evidence-guided decision-making
Ben Deverett, Sue Ann Koay, Marlies Oostland, and Samuel S.-H. Wang
bioRxiv posted 11 June 2018
Deep learning models reveal internal structure and diverse computations in the retina under natural scenes
Niru Maheswaranathan, Lane T. McIntosh, David B. Kastner, Josh Melander, Luke Brezovec, Aran Nayebi, Julia Wang, Surya Ganguli, and Stephen A. Baccus
bioRxiv posted 8 June 2018
Open source modules for tracking animal behavior and closed-loop stimulation based on Open Ephys and Bonsai
Alessio Paolo Buccino, Mikkel Elle Lepperod, Svenn-Arne Dragly, Philipp Dominik Hafliger, Marianne Fyhn, and Torkel Hafting
bioRxiv posted 7 June 2018
Calcium activation of frequency dependent temporally phasic, localized, and dense population of cortical neurons by continuous electrical stimulation
Nicholas J. Michelson, Riazul Islam, Alberto L Vazquez, Kip A. Ludwig, and Takashi Daniel Yoshida Kozai
bioRxiv posted 7 June 2018
Locus Coeruleus tracking of prediction errors optimises cognitive flexibility: an Active Inference model.
Anna C. Sales, Karl J. Friston, Matthew W. Jones, Anthony E. Pickering, and Rosalyn J. Moran
bioRxiv posted 6 June 2018
Computational algorithms and neural circuitry for compressed sensing in the mammalian main olfactory bulb
Daniel Kepple, Brittany N. Cazakoff, Heike S. Demmer, Dennis Eckmeier, Stephen D. Shea, and Alexei A. Koulakov
bioRxiv posted 5 June 2018
Whole-brain imaging and characterization of Drosophila brains based on one-, two-, and three-photon excitations
Shi-Wei Chu, Yen-Yin Lin, Ann-Shyn Chiang, and Kuo-Jen Hsu
bioRxiv posted 5 June 2018
Detection of task-relevant and task-irrelevant motion sequences: application to motor adaptation in goal-directed and whole-body movements
Daisuke Furuki and Ken Takiyama
bioRxiv posted 5 June 2018
CaImAn: An open source tool for scalable Calcium Imaging data Analysis
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jeremie Kalfon, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou, David W Tank, Dmitri B Chklovskii, Eftychios A Pnevmatikakis
bioRxiv posted 5 June 2018
Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data
Kelly Buchanan, Ian Kinsella, Ding Zhou, Rong Zhu, Pengcheng Zhou, Felipe Gerhard, John Ferrante, Ying Ma, Sharon Kim, Mohammed Shaik, Yajie Liang, Rongwen Lu, Jacob Reimer, Paul Fahey, Taliah Muhammad, Graham Dempsey, Elizabeth Hillman, Na Ji, Andreas Tolias, and Liam Paninski
bioRxiv posted 3 June 2018
Manifold-tiling Localized Receptive Fields are Optimal in Similarity-preserving Neural Networks
Anirvan Sengupta, Mariano Tepper, Cengiz Pehlevan, Alexander Genkin, and Dmitri B Chklovskii
bioRxiv posted 4 June 2018
Cerebellar contribution to preparatory activity in motor neocortex
Francois pierre Chabrol, Antonin Blot, and Thomas D Mrsic-Flogel
bioRxiv posted 31 May 2018
Fast Hebbian Plasticity explains Working Memory and Neural Binding
Florian Fiebig, Pawel Herman, and Anders Lansner
bioRxiv posted 30 May 2018
Disinhibition as a canonical neural mechanism for flexible behavior
Dominic Standage, Martin Pare, and Gunnar Blohm
bioRxiv posted 30 May 2018
