From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
Skill-specific changes in cortical preparatory activity during motor learning
Xulu Sun, Daniel J. O’Shea, Matthew D. Golub, Eric M. Trautmann, Saurabh Vyas, Stephen I. Ryu, and Krishna V. Shenoy
bioRxiv posted 31 January 2020 doi:10.1101/2020.01.30.919894
A Disinhibitory Circuit for Contextual Modulation in Primary Visual Cortex
Andreas J Keller, Morgane M Roth, Matthew Caudill, Mario Dipoppa, Kenneth D Miller, and Massimo Scanziani
bioRxiv posted 31 January 2020 doi:10.1101/2020.01.31.929166
Online analysis of microendoscopic 1-photon calcium imaging data streams
Johannes Friedrich, Andrea Giovannucci, and Eftychios A Pnevmatikakis
bioRxiv posted 31 January 2020 doi:10.1101/2020.01.31.929141
Encoding Innately Recognized Odors via a Generalized Population Code
Qiang Qiu, Yunming Wu, Limei Ma, and C. Ron Yu
bioRxiv posted 30 January 2020 doi:10.1101/2020.01.28.923748
Hierarchical Network Model Excitatory-Inhibitory Tone Shapes Alternative Strategies for Different Degrees of Uncertainty in Multi-Attribute Decisions
Warren Woodrich Pettine, Kenway Louie, John D Murray, and Xiao-Jing Wang
bioRxiv posted 29 January 2020 doi:10.1101/2020.01.28.923649
MazeMaster: an open-source Python-based software package for controlling virtual reality experiments
Alexander Bexter and Bjoern M Kampa
bioRxiv posted 28 January 2020 doi:10.1101/2020.01.27.921148
Assessing Goodness-of-Fit in Marked-Point Process Models of Neural Population Coding via Time and Rate Rescaling
Yalda Amidi, Ali Yousefi, Behzad Nazari, and Uri Eden
bioRxiv posted 24 January 2020 doi:10.1101/2020.01.24.919050
A Connectome of the Adult Drosophila Central Brain
Shan Xu, Michal Januszewski, Zhiyuan Lu, Shin-ya Takemura, Kenneth Hayworth, Gary Huang, Kazunori Shinomiya, Jeremy Maitin-Shepard, David Ackerman, Stuart Berg, Tim Blakely, John Bogovic, Jody Clements, Tom Dolafi, Philip Hubbard, Dagmar Kainmueller, William Katz, Takashi Kawase, Khaled Khairy, Laramie Leavitt, Peter H. Li, Larry Lindsey, Nicole Neubarth, Donald J. Olbris, Hideo Otsuna, Eric T. Troutman, Lowell Umayam, Ting Zhao, Masayoshi Ito, Jens Goldammer, Tanya Wolff, Robert Svirskas, Philipp Schlegel, Erika R. Neace, Christopher J. Knecht, Jr., Chelsea X. Alvarado, Dennis Bailey, Samantha Ballinger, Jolanta A. Borycz, Brandon Canino, Natasha Cheatham, Michael Cook, Marisa Dreyer, Octave Duclos, Bryon Eubanks, Kelli Fairbanks, Samantha Finley, Nora Forknall, Audrey Francis, Gary Patrick Hopkins, Emily M. Joyce, SungJin Kim, Nicole A. Kirk, Julie Kovalyak, Shirley A. Lauchie, Alanna Lohff, Charli Maldo nado, Emily A. Manley, Sari McLin, Caroline Mooney, Miatta Ndama, Omotara Ogundeyi, Nneoma Okeoma, Christopher Ordish, Nicholas Padilla, Christopher Patrick, Tyler Paterson, Elliott E. Phillips, Emily M. Phillips, Neha Rampally, Caitlin Ribeiro, Madelaine K. Robertson, Jon Thomson Rymer, Sean M. Ryan, Megan Sammons, Anne K. Scott, Ashley L. Scott, Aya Shinomiya, Claire Smith, Kelsey Smith, Natalie L. Smith, Margaret A. Sobeski, Alia Suleiman, Jackie Swift, Satoko Takemura, Iris Talebi, Dorota Tarnogorska, Emily Tenshaw, Temour Tokhi, John J. Walsh, Tansy Yang, Jane Anne Horne, Feng Li, Ruchi Parekh, Patricia K. Rivlin, Vivek Jayaraman, Kei Ito, Stephan Saalfeld, Reed George, Ian Meinertzhagen, Gerald M. Rubin, Harald F. Hess, Louis K. Scheffer, Viren Jain, and Stephen M. Plaza
bioRxiv posted 21 January 2020 doi:10.1101/2020.01.21.911859
A standardized and reproducible method to measure decision-making in mice
The International Brain Laboratory, Valeria Aguillon, Dora Angelaki, Hannah M. Bayer, Niccolo Bonacchi, Matteo Carandini, Fanny Cazettes, Anne K. Churchland, Gaelle Chapuis, Yang Dan, Eric Dewitt, Mayo Faulkner, Forrest Hamish, Laura Haetzel, Michael Hausser, Sonja Hofer, Fei Hu, Anup Khanal, Christopher Krasniak, Inês Laranjeira, Zachary Mainen, Guido Meijer, Nathaniel Miska, Thomas Mrsic-Flogel, Jean-Paul Noel, Alejandro Pan Vazquez, Josh Sanders, Karolina Socha, Rebecca Terry, Anne Urai, Hernando Martinez Vergara, Miles Wells, Christian Wilson, Ilana Witten, Lauren Wool, and Anthony Zador
bioRxiv posted 19 January 2020 doi:10.1101/2020.01.17.909838
Achieving stable dynamics in neural circuits
Leo Kozachkov, Mikael Lundqvist, Jean-Jacques Slotine, and Earl K. Miller
bioRxiv posted 17 January 2020 doi:10.1101/2020.01.17.910174
Distinct signals in medial and lateral VTA dopamine neurons modulate fear extinction at different times
Lili Cai, Katherine Pizano, Gregory Gundersen, Cameron Hayes, Weston Fleming, and Ilana B Witten
bioRxiv posted 15 January 2020 doi:10.1101/2020.01.14.906024
SpikeForest: reproducible web-facing ground-truth validation of automated neural spike sorters
Jeremy F Magland, James J Jun, Elizabeth Lovero, Alexander J Morley, Cole L Hurwitz, Alessio P Buccino, Samuel Garcia, and Alex H Barnett
bioRxiv posted 14 January 2020 doi:10.1101/2020.01.14.900688
Unsupervised changes in core object recognition behavioral performance are accurately predicted by unsupervised neural plasticity in inferior temporal cortex
Xiaoxuan Jia, Ha Hong, and James J. DiCarlo
bioRxiv posted 14 January 2020 doi:10.1101/2020.01.13.900837
Unifying and generalizing models of neural dynamics during decision-making
David M. Zoltowski, Jonathan W. Pillow, Scott W. Linderman
arXiv posted 13 January 2020
Scaling of information in large neural populations reveals signatures of information-limiting correlations
MohammadMehdi Kafashan, Anna Jaffe, Selmaan N Chettih, Ramon Nogueira, Iñigo Arandia-Romero, Christopher D. Harvey, Rubén Moreno-Bote, and Jan Drugowitsch
bioRxiv posted 11 January 2020 doi:10.1101/2020.01.10.902171
‘Differences in memory for what, where, and when components of recently-formed episodes
John J Sakon and Roozbeh Kiani
bioRxiv posted 10 January 2020 doi:10.1101/2020.01.09.901033
A latent variable approach to decoding neural population activity
Matthew R Whiteway, Bruno Averbeck, and Daniel A Butts
bioRxiv posted 7 January 2020 doi:10.1101/2020.01.06.896423
Low-Dimensional Spatio-Temporal Dynamics Underlie Cortex Wide Neural Activity
Camden J MacDowell and Timothy J Buschman
bioRxiv posted 6 January 2020 doi:10.1101/2020.01.05.895177
