From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
From preliminary to definitive plans: two classes of neurons in frontal eye field
Joshua I Glaser, Daniel K Wood, Patrick N Lawlor, Mark A Segraves, and Konrad P Kording
bioRxiv posted 22 January 2018
Linear-Nonlinear-Time-Warp-Poisson models of neural activity
Patrick N Lawlor, Matthew G Perich, Lee E Miller, and Konrad P Kording
bioRxiv posted 22 January 2018
Choice history biases subsequent evidence accumulation
Anne E. Urai, Jan Willem de Gee, and Tobias H. Donner
bioRxiv posted 22 January 2018
Mathematical modeling of navigational decisions based on intensity versus directionality in Drosophila larval phototaxis
Lucia de Andres-Bragado, Christian Mazza, Walter Senn, and Simon Sprecher
bioRxiv posted 17 January 2018
Intrinsic dynamics enhance decodability of neurons in a model of avian auditory cortex
Margot Bjoring and C Daniel Meliza
bioRxiv posted 17 January 2018
Spike sorting with Gaussian mixture models
Bryan C Souza, Vítor Lopes-dos-Santos, João Bacelo, and Adriano BL Tort
bioRxiv posted 17 January 2018
Parallel holographic illumination enables sub-millisecond two-photon optogenetic activation in mouse visual cortex in vivo
I-Wen Chen, Emiliano Ronzitti, Brian R. Lee, Tanya L. Daigle, Hongkui Zeng, Eirini Papagiakoumou, and Valentina Emiliani
bioRxiv posted 21 January 2018
Spatial cell firing during virtual navigation of open arenas by head-restrained mice
Guifen Chen, John A King, Yi Lu, Francesca Cacucci, and Neil Burgess
bioRxiv posted 11 January 2018
Value Representations in Orbitofrontal Cortex Drive Learning, but not Choice
Kevin J Miller, Matthew M Botvinick, and Carlos D Brody
bioRxiv posted 10 January 2018 doi:10.1101/245720
Causal contribution and dynamical encoding in the striatum during evidence accumulation
Michael M Yartsev, Timothy D Hanks, Alice M Yoon, and Carlos D Brody
bioRxiv posted 10 January 2018
Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits
Padraig Gleeson, Matteo Cantarelli, Boris Marin, Adrian Quintana, Matt Earnshaw, Eugenio Piasini, Justas Birgiolas, Robert C Cannon, N Alex Cayco-Gajic, Sharon Crook, Andrew P Davison, Salvador Dura-Bernal, Andras Ecker, Michael L Hines, Giovanni Idili, Stephen Larson, William W Lytton, Amit Majumdar, Robert A McDougal, Subhashini Sivagnanam, Sergio Solinas, Rokas Stanislovas, Sacha J van Albada, Werner Van Geit, and R Angus Silver
bioRxiv posted 11 January 2018
Collicular circuits for flexible sensorimotor routing
Chunyu A Duan, Marino Pagan, Alex T Piet, Charles D Kopec, Athena Akrami, Alexander J Riordan, Jeffrey C Erlich, and Carlos D Brody
bioRxiv posted 9 January 2018
A Diverse Range of Factors Affect the Nature of Neural Representations Underlying Short-Term Memory
Emin Orhan and Wei Ji Ma
bioRxiv posted 8 January 2018
Neural substrates of navigational decision-making in Drosophila larva anemotaxis
Tihana Jovanic, James W Truman, Marc Gershow, and Marta Zlatic
bioRxiv posted 8 January 2018
Maximum entropy models reveal the correlation structure in cortical neural activity during wakefulness and sleep
Trang-Anh Nghiem, Bartosz Telenczuk, Olivier Marre, Alain Destexhe, and Ulisse Ferrari
bioRxiv posted 5 January 2018
Efficient neural decoding of self-location with a deep recurrent network
Ardi Tampuu, Tambet Matiisen, Hauđur Freyja Ólafsdóttir, Caswell Barry, and Raul Vicente
bioRxiv posted 5 January 2018
A simple model for low variability in neural spike trains
Ulisse Ferrari, Stephane Deny, Olivier Marre, and Thierry Mora
bioRxiv posted 5 January 2018
Open source toolkit for temporally controlled rodent behavior suitable for electrophysiology and optogenetic manipulations
Nicola Solari, Katalin Sviatko, Tamas Laszlovszky, Panna Hegedus, and Balazs Hangya
bioRxiv posted 5 January 2018
A polymer probe-based system for high density, long-lasting electrophysiological recordings across distributed neuronal circuits
Jason E Chung, Hannah R Joo, Jiang Lan Fan, Daniel F Liu, Alex H Barnett, Supin Chen, Charlotte Geaghan-Breiner, Mattias P Karlsson, Magnus Karlsson, Kye Y Lee, Hexin Liang, Jeremy F Magland, W Hamish Mehaffey, Angela C Tooker, Michael S Brainard, Leslie F Greengard, Vanessa M Tolosa, and Loren M Frank
bioRxiv posted 4 January 2018
Uncovering temporal structure in hippocampal output patterns
Koroush Maboudi, Etienne Ackermann, Brad E Pfeiffer, David J Foster, Kamran Diba, and Caleb Kemere
bioRxiv posted 4 January 2018
Learning optimal decisions with confidence
Jan Drugowitsch and Alexandre Pouget
bioRxiv posted 7 January 2018
Emergence of V1 connectivity pattern and Hebbian rule in a performance-optimized artificial neural network
Fangzhou Liao, Xiaolin Hu, and Sen Song
bioRxiv posted 7 January 2018
Large-scale, high-resolution comparison of the core visual object recognition behavior of humans, monkeys, and state-of-the-art deep artificial neural networks
Rishi Rajalingham, Elias B. Issa, Pouya Bashivan, Kohitij Kar, Kailyn Schmidt, and James J DiCarlo
bioRxiv posted 1 January 2018
Circuit and cellular mechanisms facilitate the transformation from dense to sparse coding in the insect olfactory system
Rinaldo L Betkiewicz, Martin Paul Nawrot, and Benjamin Lindner
bioRxiv posted 29 December 2017
Satiation State-dependent Dopaminergic Control of Food Seeking in Drosophila
Dan Landayan, David S Feldman, and Fred W Wolf
bioRxiv posted 29 December 2017
Task Engagement Enhances Population Encoding of Stimulus Meaning in Primary Auditory Cortex
Sophie Bagur, Martin Averseng, Diego Elgueda, Stephen David, Jonathan Fritz, Pingbo Yin, Shihab Shamma, Yves Boubenec, and Srdjan Ostojic
bioRxiv posted 28 December 2017
Rethinking dopamine prediction errors
Samuel Joseph Gershman and Geoffrey Schoenbaum
bioRxiv posted 25 December 2017
Emergence of reward expectation signals in identified dopamine neurons
Luke T Coddington and Joshua T Dudman
bioRxiv posted 22 December 2017
NeuroField: Theory and Simulation of Multiscale Neural Field Dynamics
Paula Sanz-Leon, P. A. Robinson, S. A. Knock, P. D. Drysdale, R. G. Abeysuriya, P. K. Fung, C. J. Rennie, and X. Zhao
bioRxiv posted 20 December 2017
Fully unsupervised online spike sorting based on an artificial spiking neural network
Marie Bernert and Blaise Yvert
bioRxiv posted 20 December 2017
