From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv and arXiv for interesting papers from the SCGB community and beyond.

 

Neural population dynamics underlying evidence accumulation in multiple rat brain regions

Brian DePasquale, Jonathan W Pillow, and Carlos Brody

bioRxiv posted 29 October 2021

[Abstract] [PDF]

 

Spontaneous emergence of topologically robust grid cell modules: A multiscale instability theory

Mikail Khona, Sarthak Chandra, and Ila Fiete

bioRxiv posted 29 October 2021

[Abstract] [PDF]

 

Offline memory replay in recurrent neuronal networks emerges from constraints on online dynamics

Aaron D Milstein, Sarah Tran, Grace Ng, and Ivan Soltesz

bioRxiv posted 28 October 2021

[Abstract] [PDF]

 

Long-term stability of neural activity in the motor system

Kristopher T. Jensen, Naama Kadmon Harpaz, Ashesh K. Dhawale, Steffen B. E. Wolff, and Bence Ölveczky

bioRxiv posted 28 October 2021

[Abstract] [PDF]

 

Generalized Shape Metrics on Neural Representations

Alex H. Williams, Erin Kunz, Simon Kornblith, Scott W. Linderman

arXiv posted 27 October 2021

[Abstract]

 

​​Sensory prediction errors increase coding efficiency in mouse visual cortex through gain amplification

Matthew F Tang, Ehsan Kheradpezhouh, Conrad CY Lee, J Edwin Dickinson, Jason B Mattingley, and Ehsan Arabzadeh

bioRxiv posted 26 October 2021

[Abstract] [PDF]

 

A positively Tuned Voltage Indicator Reveals Electrical Correlates of Calcium Activity in the Brain

Stephen Wenceslao Evans, Dongqing Shi, Mariya Chavarha, Mark Houston Plitt, Jiannis Taxidis, Blake Madruga, Siri Camee Van Keulen, Michelle Pang, Sharon Su, Fuu-Jiun Hwang, Guofeng Zhang, Austin Reese, Lagnajeet Pradhan, Jiang Lan Fan, Sungmoo Lee, Yu Liu, Carl-Mikael Suomivuori, Dongyun Jiang, Adrian Negrean, Sui Wang, Na Ji, Tom Clandinin, Ron Dror, Guoqiang Guo Bi, Chris Donald Makinson, Peyman Golshani, Lisa M. Giocomo, Attila Losonczy, Jun B. Ding, and Michael Z. Lin

bioRxiv posted 23 October 2021

[Abstract] [PDF]

 

Feature representation under crowding in V1 and V4 neuronal populations

Christopher A Henry and Adam Kohn

bioRxiv posted 23 October 2021

[Abstract] [PDF]

 

Flexible neural coding in sensory, parietal, and frontal cortices during goal-directed virtual navigation

Jean-Paul Noel, Edoardo Balzani, Eric Avila, Kaushik Lakshminarasimhan, Stefania Bruni, Panagiotis Alefantis, Cristina Savin, and Dora Angelaki

bioRxiv posted 24 October 2021

[Abstract] [PDF]

 

Systematic reduction of the dimensionality of natural scenes allows accurate predictions of retinal ganglion cell spike outputs.

Julian Freedland and Fred Rieke

bioRxiv posted 22 October 2021

[Abstract] [PDF]

 

Abstract representations emerge naturally in neural networks trained to perform multiple tasks

Jeffrey Johnston and Stefano Fusi

bioRxiv posted 21 October 2021

[Abstract] [PDF]

 

Combining Different V1 Brain Model Variants to Improve Robustness to Image Corruptions in CNNs

Avinash Baidya, Joel Dapello, James J. DiCarlo, Tiago Marques

arXiv posted 20 October 2021

[Abstract] [PDF]

 

Estimating null and potent modes of feedforward communication in a computational model of cortical activity

Jean-Philippe Thivierge and Artem Pilzak

bioRxiv posted 19 October 2021

[Abstract] [PDF]

 

M1 dynamics share similar inputs for initiating and correcting movement

Peter J Malonis, Nicholas G Hatsopoulos, Jason N MacLean, and Matthew T Kaufman

bioRxiv posted 19 October 2021

[Abstract] [PDF]

 

Probing the relationship between linear dynamical systems and low-rank recurrent neural network models

Adrian Valente, Srdjan Ostojic, Jonathan Pillow

arXiv posted 19 October 2021

[Abstract] [PDF]

 

TRAKR – A reservoir-based tool for fast and accurate classification of neural time-series patterns

Muhammad Furqan Afzal, Christian David Márton, Erin L. Rich, and Kanaka Rajan

bioRxiv posted 15 October 2021

[Abstract] [PDF]

 

Dual polarity voltage imaging reveals subthreshold dynamics and concurrent spiking patterns of multiple neuron-types

Madhuvanthi Kannan, Ganesh Vasan, Simon Haziza, Cheng Huang, Radek Chrapkiewicz, Junjie Luo, Jessica A Cardin, Mark J Schnitzer, and Vincent A Pieribone

bioRxiv posted 15 October 2021

[Abstract] [PDF]

 

Feature-based gating of cortical information transmission

Sonia Baloni Ray, Daniel Kaping, and Stefan Treue

bioRxiv posted 12 October 2021

[Abstract] [PDF]

 

Low-dimensional encoding of decisions in parietal cortex reflects long-term training history

Kenneth W Latimer and David J Freedman

bioRxiv posted 9 October 2021

[Abstract] [PDF]

 

iLQR-VAE : control-based learning of input-driven dynamics with applications to neural data

Marine Schimel, Ta-Chu Kao, Kristopher T. Jensen, and Guillaume Hennequin

bioRxiv posted 9 October 2021

[Abstract] [PDF]

 

Covert valuation for information sampling and choice

James Lawrence Butler, Timothy H. Muller, Sebastijan Veselic, W.M. Nishantha Malalasekera, Laurence T Hunt, Timothy E.J. Behrens, and Steven W. Kennerley

bioRxiv posted 9 October 2021

[Abstract] [PDF]

 

A Minimum Perturbation Theory of Deep Perceptual Learning

Haozhe Shan and Haim Sompolinsky

bioRxiv posted 7 October 2021

[Abstract] [PDF]

 

Differential geometry methods for constructing manifold-targeted recurrent neural networks.

Federico Claudi and Tiago Branco

bioRxiv posted 7 October 2021

[Abstract] [PDF]

 

CNN MouseNet: A biologically constrained convolutional neural network model for mouse visual cortex

Jianghong Shi, Bryan Tripp, Eric Shea-Brown, Stefan Mihalas, and Michael Buice

bioRxiv posted 5 October 2021

[Abstract] [PDF]

 

The generalized spatial representation in the prefrontal cortex is inherited from the hippocampus

Michele Nardin, Karola Kaefer, and Jozsef Csicsvari

bioRxiv posted 2 October 2021

[Abstract] [PDF]

 

Higher-order olfactory neurons in the lateral horn supports odor valence and odor identity coding in Drosophila

Sudeshna Das Chakraborty, Hetan Chang, Bill S Hansson, and Silke Sachse

bioRxiv posted 1 October 2021

[Abstract] [PDF]

 

Small, correlated changes in synaptic connectivity may facilitate rapid motor learning

Barbara Feulner, Matthew G. Perich, Raeed H. Chowdhury, Lee E. Miller, Juan A. Gallego, and Claudia Clopath

bioRxiv posted 1 October 2021

[Abstract] [PDF]

 

 

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