From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
A unified theory for the computational and mechanistic origins of grid cells
Ben Sorscher, Gabriel C. Mel, Samuel A Ocko, Lisa Giocomo, and Surya Ganguli
bioRxiv posted 30 December 2020
Fully autonomous mouse behavioral and optogenetic experiments in home-cage
Yaoyao Hao, Alyse M. Thomas, and Nuo Li
bioRxiv posted 30 December 2020
Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories
Mikhail Genkin, Owen Hughes, Tatiana A. Engel
arXiv posted 29 December 2020
Multiple timescales of sensory-evidence accumulation across the dorsal cortex
Lucas Pinto, David W Tank, and Carlos Brody
bioRxiv posted 29 December 2020
Shared population-level dynamics in monkey premotor cortex during solo action, joint action and action observation
Giovanni Pezzulo, Francesco Donnarumma, Simone Ferrari-Toniolo, Paul Cisek, and Alexandra Battaglia-Mayer
bioRxiv posted 23 December 2020
The problem of perfect predictors in statistical spike train models
Sahand Farhoodi and Uri Eden
bioRxiv posted 23 December 2020
A neuronal circuit for vector computation builds an allocentric traveling-direction signal in the Drosophila fan-shaped body
Cheng Lyu, Larry Abbott, and Gaby Maimon
bioRxiv posted 23 December 2020 doi:10.1101/2020.12.22.423967
Transforming representations of movement from body- to world-centric space
Jenny Lu, Elena A. Westeinde, Lydia Hamburg, Paul M. Dawson, Cheng Lyu, Gaby Maimon, Shaul Druckmann, and Rachel I. Wilson
bioRxiv posted 23 December 2020
Developmental and evolutionary constraints on olfactory circuit selection
Naoki Hiratani and Peter E Latham
bioRxiv posted 22 December 2020
A scale-dependent measure of system dimensionality
Stefano Recanatesi, Serena Bradde, Vijay Balasubramanian, Nicholas A Steinmetz, and Eric Shea-Brown
bioRxiv posted 21 December 2020
Task specificity in mouse parietal cortex
Julie J Lee, Michael Krumin, Kenneth D Harris, and Matteo Carandini
bioRxiv posted 21 December 2020
Inferring brain-wide interactions using data-constrained recurrent neural network models
Matthew G Perich, Charlotte Arlt, Sofia Soares, Megan E. Young, Clayton P. Mosher, Juri Minxha, Eugene Carter, Ueli Rutishauser, Peter H. Rudebeck, Christopher D. Harvey, and Kanaka Rajan
bioRxiv posted 21 December 2020
Object recognition under occlusion revisited: elucidating algorithmic advantages of recurrent computation
Byungwoo Kang and Shaul Druckmann
bioRxiv posted 16 December 2020
A midbrain – thalamus – cortex circuit reorganizes cortical dynamics to initiate planned movement
Hidehiko K. Inagaki, Susu Chen, Margreet C. Ridder, Pankaj Sah, Nuo Li, Zidan Yang, Hana Hasanbegovic, Zhenyu Gao, Charles R. Gerfen, and Karel Svoboda
bioRxiv posted 16 December 2020
From neuron to muscle to movement: a complete biomechanical model of Hydra contractile behaviors
Hengji Wang, Joshua Swore, Shashank Sharma, John Szymanski, Rafael Yuste, Thomas Daniel, Michael Regnier, Martha Bosma, Adrienne L. Fairhall
Total recall: episodic memory retrieval,choice, and memory confidence in the rat
Hannah R. Joo, Hexin Liang, Jason E Chung, Charlotte Geaghan-Breiner, Jiang Lan Fan, Benjamin Nachman, Adam Kepecs, and Loren M. Frank
bioRxiv posted 15 December 2020
The connectome predicts resting state functional connectivity across the Drosophila brain
Maxwell H Turner, Kevin Mann, and Thomas R. Clandinin
bioRxiv posted 11 December 2020
Can we conjointly record direct interactions between neurons in vivo in anatomically-connected brain areas? Probabilistic analyses and further implications.
Sean K Martin, John Aggleton, and Shane O’Mara
bioRxiv posted 8 December 2020
Grid cell firing fields in a volumetric space
Roddy M. Grieves, Selim Jedidi-Ayoub, Karyna Mishchanchuk, Anyi Liu, Sophie Renaudineau, Éléonore Duvelle, and Kate J. Jeffery
bioRxiv posted 7 December 2020
Inferring spikes from calcium imaging in dopamine neurons
Weston Fleming, Sean Jewell, Ben Engelhard, Daniela Witten, and Ilana Witten
bioRxiv posted 6 December 2020
Bridging neuronal correlations and dimensionality reduction
Akash Umakantha, Rudina Morina, Benjamin R Cowley, Adam C Snyder, Matthew A Smith, and Byron M Yu
bioRxiv posted 4 December 2020
Unsupervised Deep Video Denoising
Dev Yashpal Sheth, Sreyas Mohan, Joshua L. Vincent, Ramon Manzorro, Peter A. Crozier, Mitesh M. Khapra, Eero P. Simoncelli, Carlos Fernandez-Granda
Arxiv posted 1 December 2020
Nonsense correlations in neuroscience
bioRxiv posted 30 November 2020
Recurrent dynamics of prefrontal cortex during context-dependent decision-making
Zach Cohen, Brian DePasquale, Mikio C Aoi, and Jonathan W Pillow
bioRxiv posted 27 November 2020
Precise spatial representations in the hippocampus of a food-caching bird
Hannah L. Payne, Galen F. Lynch, and Dmitriy Aronov
bioRxiv posted 27 November 2020
Prefrontal cortical activity predicts the extra-place field spiking of hippocampal place cells
Jai Y Yu and Loren Frank
bioRxiv posted 24 November 2020
Predicting perturbation effects from resting state activity using functional causal flow
Amin Nejatbakhsh, Francesco Fumarola, Saleh Esteki, Taro Toyoizumi, Roozbeh Kiani, and Luca Mazzucato
bioRxiv posted 24 November 2020
Recurrent circuit based neural population codes for stimulus representation and inference
Wenhao Zhang, Si Wu, Kresimir Josic, and Brent Doiron
bioRxiv posted 20 November 2020
Rotational dynamics in motor cortex are consistent with a feedback controller
Hari Teja Kalidindi, Kevin P Cross, Timothy P Lillicrap, Mohsen Omrani, Egidio Falotico, Philip N. Sabes, and Stephen H Scott
bioRxiv posted 20 November 2020
Reinforcing neuron extraction and spike inference in calcium imaging using deep self-supervised learning
Xinyang Li, Guoxun Zhang, Jiamin Wu, Yuanlong Zhang, Zhifeng Zhao, Xing Lin, Hui Qiao, Hao Xie, Haoqian Wang, Lu Fang, and Qionghai Dai
bioRxiv posted 17 November 2020
Structure and variability of optogenetic responses identify the operating regime of cortex
Agostina Palmigiano, Francesco Fumarola, Daniel P. Mossing, Nataliya Kraynyukova, Hillel Adesnik, and Kenneth Miller
bioRxiv posted 11 November 2020
Working Memory Gates Visual Input to Primate Prefrontal Neurons
Behrad Noudoost, Kelsey Lynne Clark, and Tirin Moore
bioRxiv posted 9 November 2020
Dorsomedial prefrontal neural ensembles reflect changes in task utility
Blake Scott Porter and Kristin L Hillman
bioRxiv posted 6 November 2020
Modelling the neural code in large populations of correlated neurons
Sacha Sokoloski, Amir Aschner, and Ruben Coen-Cagli
bioRxiv posted 6 November 2020
Strong coupling and local control of dimensionality across brain areas
David Dahmen, Stefano Recanatesi, Gabriel Koch Ocker, Xiaoxuan Jia, Moritz Helias, and Eric Shea-Brown
bioRxiv posted 4 November 2020
Topology of synaptic connectivity constrains neuronal stimulus representation, predicting two complementary coding strategies
Michael W Reimann, Henri Riihimäki, Jason P Smith, Janis Lazovskis, Christoph Pokorny, and Ran Levi
bioRxiv posted 3 November 2020
