From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv and arXiv for interesting papers from the SCGB community and beyond.

A recurrent neural network model of prefrontal brain activity during a working memory task

Emilia P Piwek, Mark G Stokes, and Christopher P Summerfield

bioRxiv posted 2 September 2022

[Abstract] [PDF]

 

Cortical Circuit Mechanisms of Multimodal Temporal Pattern Discrimination

Sam Post, William Mol, Omar Abu-Wishah, Shazia Ali, Noorhan Rahmatullah, and Anubhuti Goel

bioRxiv posted 8 September 2022

[Abstract] [PDF]

 

Imaging through Windansee electrode arrays reveals a small fraction of local neurons following surface MUA

Martin Thunemann, Lorraine Hossain, Torbjørn V Ness, Nicholas Rogers, Keundong Lee, Sang-Heong Lee, Kıvılcım Kılıc, Hongseok Oh, Michael Nicholas Economo, Vikash Gilja, Gaute Einevoll, Shadi Dayeh, and Anna Devor

bioRxiv posted 3 September 2022

[Abstract] [PDF]

 

Excitation creates a distributed pattern of cortical suppression due to varied recurrent input

Jonathan F. O’Rawe, Zhishang Zhou, Anna J. Li, Paul K. LaFosse, Hannah C. Goldbach, and Mark H. Histed

bioRxiv posted 3 September 2022

[Abstract] [PDF]

 

Cell type-specific basal forebrain GABAergic neuronal activity with olfactory task performance, learning, and decision-making

Elizabeth L Hanson Moss, Evelyne K Tantry, Elaine Le, Katie Brandel-Ankrapp, and Benjamin R Arenkiel

bioRxiv posted 4 September 2022

[Abstract] [PDF]

 

The locus coeruleus mediates behavioral flexibility

Jim McBurney-Lin and Hongdian Yang

bioRxiv posted 4 September 2022

[Abstract] [PDF]

 

Disentangled multi-subject and social behavioral representations through a constrained subspace variational autoencoder (CS-VAE)

Daiyao Yi, Simon Musall, Anne Churchland, Nancy Padilla-Coreano, and Shreya Saxena

bioRxiv posted 5 September 2022

[Abstract] [PDF]

 

Neural cognitive signals during spontaneous movements in the macaque

Sebastien Tremblay, Camille Testard, Ron W DiTullio, Jeanne Inchauspe, and Michael Petrides

bioRxiv posted 6 September 2022

[Abstract] [PDF]

 

Self-generated brain-wide spiking cascades govern replay dynamics in the hippocampus

Yifan Yang, David Leopold, Jeff Duyn, and Xiao Liu

bioRxiv posted 6 September 2022

[Abstract] [PDF]

 

Graded optogenetic activation of the auditory pathway for neural network analysis and hearing restoration

Artur Mittring, Tobias Moser, and Antoine Tarquin Huet

bioRxiv posted 6 September 2022

[Abstract] [PDF]

 

Cognition through internal models: Mirror neurons as one manifestation of a broader mechanism

Tyson Aflalo, Srinivas Chivukula, Carey Zhang, Emily R Rosario, Nader Pouratian, and Richard A Andersen

bioRxiv posted 8 September 2022

[Abstract] [PDF]

 

Visual object topographic motifs emerge from self-organization of a unified representational space

Fenil R. Doshi and Talia Konkle

bioRxiv posted 8 September 2022

[Abstract] [PDF]

 

Evolution of predictive memory in the hippocampus

Adam M P Miller, Alex D Jacob, Adam I Ramsaran, Mitchell L De Snoo, Sheena A Josselyn, and Paul W Frankland

bioRxiv posted 9 September 2022

[Abstract] [PDF]

 

Unsupervised Restoration of a Complex Learned Behavior After Large-Scale Neuronal Perturbation

Bo Wang, Zsofia Torok, Alison Duffy, David Bell, Shelyn Wongso, Tarciso Velho, Adrienne Fairhall, and Carlos Lois

bioRxiv posted 10 September 2022

[Abstract] [PDF]

 

Local and long-distance inputs dynamically regulate striatal acetylcholine during decision making

Lynne Chantranupong, Celia C Beron, Joshua A Zimmer, Michelle J Wen, Wengang Wang, and Bernardo Luis Sabatini

bioRxiv posted 10 September 2022

[Abstract] [PDF]

 

Activity in primate visual cortex is minimally driven by spontaneous movements

Bharath C Thalluri, Incheol Kang, Adam Lazere, Katrina R Quinn, Nicholas Kaliss, Jacob Yates, Daniel A Butts, and Hendrikje Nienborg

bioRxiv posted 10 September 2022

[Abstract] [PDF]

 

Subtype-specific roles of ellipsoid body ring neurons in sleep regulation in Drosophila

Wei Yan, Hai Lin, Junwei Yu, Timothy D Wiggin, Litao Wu, Zhiqiang Meng, Chang Liu, and Leslie Griffith

bioRxiv posted 13 September 2022

[Abstract] [PDF]

 

Correlated somatosensory input in parvalbumin/pyramidal cells in mouse motor cortex

Roman U Goz and Bryan M Hooks

bioRxiv posted 13 September 2022

[Abstract] [PDF]

 

Cross-Modal Representation of Identity in Primate Hippocampus

Timothy Tyree, Michael Metke, and Cory Miller

bioRxiv posted 13 September 2022

[Abstract] [PDF]

 

Non-necessary neural activity in the primate cortex

Sebastien Tremblay, Camille Testard, Jeanne Inchauspe, and Michael Petrides

bioRxiv posted 13 September 2022

[Abstract] [PDF]

 

Comparing the representation of a simple visual stimulus across the cerebellar network

Ot Prat, Luigi Petrucco, Vilim Stih, and Ruben Portugues

bioRxiv posted 14 September 2022

[Abstract] [PDF]

 

Neural Representations of Post-Decision Choice Confidence and Reward Expectation in the Caudate Nucleus and Frontal Eye Field

Yunshu Fan, Takahiro Doi, Joshua I Gold, and Long Ding

bioRxiv posted 14 September 2022

[Abstract] [PDF]

 

Action prediction error: a value-free dopaminergic teaching signal that drives stable learning

Francesca Greenstreet, Hernando Martinez Vergara, Sthitapranjya Pati, Laura Schwarz, Mathew Wisdom, Fred Marbach, Yvonne Johansson, Lars Rollik, Theodore Moskovitz, Claudia M Clopath, and Marcus Stephenson-Jones

bioRxiv posted 14 September 2022

[Abstract] [PDF]

 

Rapid fluctuations in functional connectivity of cortical networks encode spontaneous behavior

Hadas Benisty, Andrew H Moberly, Sweyta Lohani, Daniel Barson, Ronald R Coifman, Gal Mishne, Jessica A Cardin and Michael J Higley

bioRxiv. posted 15 August 2021

[Abstract]

 

Fast Adaptation to Rule Switching using Neuronal Surprise

martin Louis Lucien Remy Barry and Wulfram Gerstner

bioRxiv posted 15 September 2022

[Abstract] [PDF]

 

Synaptic Competition Enhances the Discrimination of Interfering Memories

Chi Chung Alan Fung and Tomoki Fukai

bioRxiv posted 15 September 2022

[Abstract] [PDF]

 

Modeling communication and switching nonlinear dynamics in multi-region neural activity

Orren Karniol-Tambour, David M Zoltowski, E. Mika Diamanti, Lucas Pinto, David W Tank, Carlos W Brody, and Jonathan W Pillow

bioRxiv posted 15 September 2022

[Abstract] [PDF]

 

BRAin-wide Neuron quantification Tool reveals strong sexual dimorphism in the evolution of fear memory

Alessandra Franceschini, Giacomo Mazzamuto, Curzio Checcucci, Lorenzo Chicci, Duccio Fanelli, Francesco Saverio Pavone, and Ludovico Silvestri

bioRxiv posted 16 September 2022

[Abstract] [PDF]

 

The mushroom body output encodes behavioral decision during sensory-motor transformation

Cansu Arican, Felix Johannes Schmitt, Wolgang Roessler, Martin Fritz Strube-Bloss, and Martin Paul Nawrot

bioRxiv posted 16 September 2022

[Abstract] [PDF]

 

Rapid learning of neural circuitry from holographic ensemble stimulation enabled by model-based compressed sensing

Marcus A Triplett, Marta Gajowa, Benjamin Antin, Masato Sadahiro, Hillel Adesnik, and Liam Paninski

bioRxiv posted 17 September 2022

[Abstract] [PDF]

 

Cell-type-specific roles of inhibitory interneurons in the rehabilitation of auditory cortex after peripheral damage

Manoj Kumar, Gregory Handy, Stylianos Kouvaros, Lovisa Ljungqvist Brinson, Brandon Bizup, Brent Doiron, and Thanos Tzounopoulos

bioRxiv posted 17 September 2022

[Abstract] [PDF]

 

Efficient coding of natural images in the mouse visual cortex

Federico Bolanos, Javier G. Orlandi, Ryo Aoki, Akshay Jagadeesh, Justin Gardner, and Andrea Benucci

bioRxiv posted 17 September 2022

[Abstract] [PDF]

 

Medial accumbens shell spiny projection neurons encode relative reward preference

Christian E Pedersen, Daniel C Castro, Madelyn M Hjort, Zhe C Zhou, Sean C Piantadosi, Raajaram Gowrishankar, Shane A Kan, Patick J Murphy, Patrick R O’Neill, and Michael Bruchas

bioRxiv posted 18 September 2022

[Abstract] [PDF]

 

Integrating artificial and biological neural networks to improve animal task performance using deep reinforcement learning

Chenguang Li, Gabriel Kreiman, and Sharad Ramanathan

bioRxiv posted 19 September 2022

[Abstract] [PDF]

 

Disentangling temporal and rate codes in primate somatosensory cortex

Thierri Callier, Thomas Gitchell, Michael A Harvey, and Sliman J Bensmaia

bioRxiv posted 19 September 2022

[Abstract] [PDF]

 

A Computational Model of Learning Flexible Navigation in a Maze by Layout-Conforming Replay of Place Cells

Yuanxiang Gao

bioRxiv posted 19 September 2022

[Abstract] [PDF]

 

Prefrontal neuronal dynamics in the absence of task execution

Shusen Pu, Wenhao Dang, Xuelian Qi, and Christos Constantinidis

bioRxiv posted 19 September 2022

[Abstract] [PDF]

 

Distributed coding of evidence accumulation across the mouse brain using microcircuits with a diversity of timescales

Elaheh Imani, Setayesh Radkani, Alireza Hashemi, Ahad Harati, Hamidreza Pourreza, and Morteza Moazami Goudarzi

bioRxiv posted 19 September 2022

[Abstract] [PDF]

 

The logic of recurrent circuits in the primary visual cortex

Ian Antón Oldenburg, William D. Hendricks, Gregory Handy, Kiarash Shamardani, Hayley A. Bounds, Brent Doiron, and Hillel Adesnik

bioRxiv posted 22 September 2022

[Abstract] [PDF]

 

Corticothalamic Neurons in Motor Cortex Have a Permissive Role in Motor Execution

Lina Marcela Carmona, Lin T Tun, An Kim, Rani Shiao, Michael D Kissner, Vilas Menon, and Rui M Costa

bioRxiv posted 22 September 2022

[Abstract] [PDF]

 

Odorant Mixture Separation in Drosophila Early Olfactory System

Aurel A Lazar, Tingkai Liu, Chung-Heng Yeh, and Yiyin Zhou

bioRxiv posted 22 September 2022

[Abstract] [PDF]

 

Cell-type specific deletions of Neuroligin 2 reveal a vital role of synaptic excitation-inhibition balance

Colleen M. Longley, Xize Xu, Jessica E. Messier, Zhao-Lin Cai, Jung Woo Park, Hongmei Chen, Derek L. Reznik, Monika P. Jadi, and Mingshan Xue

bioRxiv posted 24 September 2022

[Abstract] [PDF]

 

Preserved neural population dynamics across animals performing similar behaviour

Mostafa Safaie, Joanna C Chang, Junchol Park, Lee E Miller, Joshua T Dudman, Matthew G Perich, and Juan Alvaro Gallego

bioRxiv posted 27 September 2022

[Abstract] [PDF]

 

Primate pre-arcuate cortex actively maintains persistent representations of saccades from plans to outcomes

Ioana Calangiu, Sepp Kollmorgen, John Reppas, and Valerio Mante

bioRxiv posted 27 September 2022

[Abstract] [PDF]

 

3D Printed Skull Cap and Benchtop Fabricated Microwire-based Microelectrode Array for Custom Rat Brain Recordings

Dongyang Yi, Jeremiah P Hartner, Brian S Ung, Harrison L Zhu, Brendon O Watson, and Lei Chen

bioRxiv posted 27 September 2022

[Abstract] [PDF]

 

Hippocampo-cortical circuits for selective memory encoding, routing, and replay

Ryan E Harvey, Heath L Robinson, Can Liu, Azahara Oliva, and Antonio Fernandez-Ruiz

bioRxiv posted 27 September 2022

[Abstract] [PDF]

 

Brain mechanism of foraging: reward-dependent synaptic plasticity or neural integration of values?

Ulises Pereira-Obilinovic, Han Hou, Karel Svoboda, and Xiao-Jing Wang

bioRxiv posted 27 September 2022

[Abstract] [PDF]

 

Phase of firing does not reflect temporal order in sequence memory of humans and recurrent neural networks

Stefanie Liebe, Johannes Niediek, Matthijs Pals, Thomas P. Reber, Jennifer Faber, Jan Bostroem, Christian E. Elger, Jakob H Macke, and Florian Mormann

bioRxiv posted 27 September 2022

[Abstract] [PDF]

 

Common population codes produce extremely nonlinear neural manifolds

Anandita De and Rishidev Chaudhuri

bioRxiv posted 28 September 2022

[Abstract] [PDF]

 

Specific connectivity optimizes learning in thalamocortical loops

Kaushik Lakshminarasimhan, Marjorie Xie, Jeremy D Cohen, Britton Sauerbrei, Adam W Hantman, Ashok Litwin-Kumar, and Sean Escola

bioRxiv posted 28 September 2022

[Abstract] [PDF]

 

Subpopulation Codes Permit Information Modulation Across Cortical States

Matthew P Getz, Chengcheng Huang, and Brent Doiron

bioRxiv posted 30 September 2022

[Abstract] [PDF]

 

Disentangling with Biological Constraints: A Theory of Functional Cell Types

James C.R. Whittington, Will Dorrell, Surya Ganguli, Timothy E.J. Behrens

arXiv posted 30 September 2022

[Abstract]

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