From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others

Each month, SCGB scans the bioRxiv and arXiv for interesting papers from the SCGB community and beyond.

Ketamine evoked disruption of entorhinal and hippocampal spatial maps

Francis Kei Masuda, Yanjun Sun, Emily A Aery Jones, and Lisa M Giocomo

bioRxiv posted 6 February 2023

[Abstract] [PDF]

 

Long-term unsupervised recalibration of cursor BCIs

Guy H Wilson, Francis R Willett, Elias A Stein, Foram Kamdar, Donald T Avansino, Leigh R Hochberg, Krishna V Shenoy, Shaul Druckmann, and Jaimie M. Henderson

bioRxiv posted 4 February 2023

[Abstract] [PDF]

 

Inferring context-dependent computations through linear approximations of prefrontal cortex dynamics

Joana Soldado Magraner, Valerio Mante, and Maneesh Sahani

bioRxiv posted 6 February 2023

[Abstract] [PDF]

 

Massive Multiplexing of Spatially Resolved Single Neuron Projections with Axonal BARseq

Li Yuan, Xiaoyin Chen, Huiqing Zhan, Henry L Gilbert, Anthony M Zador

bioRxiv posted 18 February 2023

[Abstract]

 

Delayed normalization model captures disparate nonlinear neural dynamics measured with different techniques in macaque and human V1

Jingyang Zhou, Matt Whitmire, Yuzhi Chen, and Eyal Seidemann

bioRxiv posted 1 February 2023

[Abstract] [PDF]

 

Spatial uncertainty and environmental geometry in navigation

Yul HR Kang, Daniel M Wolpert, and Máté Lengyel

bioRxiv posted 1 February 2023

[Abstract] [PDF]

 

Localist versus distributed representation of sounds in the auditory cortex controlled by distinct inhibitory neuronal subtypes

Melanie Tobin, Janaki Neimark Sheth, Katherine C Wood, and Maria Neimark Geffen

bioRxiv posted 2 February 2023

[Abstract] [PDF]

 

Stable sound decoding despite modulated sound representation in the auditory cortex

Akihiro Funamizu, Fred Marbach, and Anthony M Zador

bioRxiv posted 7 February 2023

[Abstract] [PDF]

 

The formation of an expanding memory representation in the hippocampus

Sachin P Vaidya, Raymond A Chitwood, and Jeffrey C Magee

bioRxiv posted 2 February 2023

[Abstract] [PDF]

 

Auditory memory of complex sounds in sparsely distributed, highly correlated neurons in the auditory cortex

HiJee Kang and Patrick O Kanold

bioRxiv posted 3 February 2023

[Abstract] [PDF]

 

Large-scale brain-wide neural recording in nonhuman primates

Eric M. Trautmann, Janis K. Hesse, Gabriel M. Stine, Ruobing Xia, Shude Shude Zhu, Daniel J. O’Shea, Bill Karsh, Jennifer Colonell, Frank Lanfranchi, Saurabh Vyas, Andrew Zimnik, Natalie A. Steinemann, Daniel A. Wagenaar, Alexandru Andrei, Carolina Mora Lopez, John M. OCallaghan, Jan Putzeys, Bogdan C. Raducanu, Marleen Welkenhuysen, Mark Churchland, Tirin Moore, Michael N. Shadlen, Krishna V. Shenoy, Doris Tsao, Baruneb Dutta, and Tim Harris

bioRxiv posted 10 January 2023

[Abstract] [PDF]

 

Behavioral measurements of motor readiness in mice

Elise N Mangin, Jian Chen, Jing Lin, Nuo Li

bioRxiv posted 4 February 2023

[Abstract]

 

Statistically inferred neuronal connections in subsampled neural networks strongly correlate with spike train covariance

Tong Liang and Braden A. W. Brinkman

bioRxiv posted 3 February 2023

[Abstract] [PDF]

 

Simulation-based inference for efficient identification of generative models in connectomics

Jan Boelts, Philipp Harth, Richard Gao, Daniel Udvary, Felipe Yanez, Daniel Baum, Hans-Christian Hege, Marcel Oberlaender, and Jakob H Macke

bioRxiv posted 3 February 2023

[Abstract] [PDF]

 

A Theory of Hippocampal Theta Correlations

Yuk-Hoi Yiu and Christian Leibold

bioRxiv posted 5 February 2023

[Abstract] [PDF]

 

Simultaneous Electrophysiology and Optogenetic Perturbation of the Same Neurons in Chronically Implanted Animals using microLED Silicon Probes

Nathaniel Reid Kinsky, Mihaly Voroslakos, Jose R Lopez Ruiz, Laurel Watkins de Jong, Nathan Slager, Sam McKenzie, Euisik Yoon, and Kamran Diba

bioRxiv posted 6 February 2023

[Abstract] [PDF]

 

Sharp wave ripple coupling in zebrafish hippocampus and basolateral amygdala

Ismary Blanco, Adam Caccavano, Jian Young Wu, Stefano Vicini, Eric Glasgow, and Katherine Conant

bioRxiv posted 8 February 2023

[Abstract] [PDF]

 

Subdural CMOS optical probe (SCOPe) for bidirectional neural interfacing

Eric H Pollmann, Heyu Yin, Ilke Uguz, Agrita Dubey, Katie Elizabeth Wingel, John S Choi, Sajjad Moazeni, Yatin Gilhotra, Victoria A Pavlovsky, Adam Banees, Vivek Boominathan, Jacob Robinson, Ashok Veeraraghavan, Vincent A Pieribone, Bijan Pesaran, Kenneth L Shepard

bioRxiv posted on 8 February 2023

[Abstract]

 

Out of sight, out of mind: Responses in primate ventral visual cortex track individual fixations during natural vision

Will Xiao, Saloni Sharma, Gabriel Kreiman, and Margaret Livignstone

bioRxiv posted 9 February 2023

[Abstract] [PDF]

 

Multiplexed Subspaces Route Neural Activity Across Brain-wide Networks

Camden J MacDowell, Alexandra Libby, Caroline I Jahn, Sina Tafazoli, and Timothy J Buschman

bioRxiv posted 12 February 2023

[Abstract] [PDF]

 

Topological Structure of Population Activity in Mouse Visual Cortex Encodes Visual Scene Rotations

Kosio Beshkov and Gaute Tomas Einevoll

bioRxiv posted 14 February 2023

[Abstract] [PDF]

 

Restructuring of olfactory representations in the fly brain around odor relationships in natural sources

Jie-Yoon Yang, Thomas F O’Connell, Wei-Mien M Hsu, Matthew S Bauer, Kristina V. Dylla, Tatyana O Sharpee, and Elizabeth J Hong

bioRxiv posted 16 February 2023

[Abstract] [PDF]

 

Stimulus novelty uncovers coding diversity in visual cortical circuits

Marina Garrett, Peter Groblewski, Alex Piet, Doug Ollerenshaw, Farzaneh Najafi, Iryna Yavorska, Adam Amster, Corbett Bennett, Michael Buice, Shiella Caldejon, Linzy Casal, Florence D’Orazi, Scott Daniel, Saskia EJ de Vries, Daniel Kapner, Justin Kiggins, Jerome Lecoq, Peter Ledochowitsch, Sahar Manavi, Nicholas Mei, Christopher B. Morrison, Sarah Naylor, Natalia Orlova, Jed Perkins, Nick Ponvert, Clark Roll, Sam Seid, Derric Williams, Allison Williford, Ruweida Ahmed, Daniel Amine, Yazan Billeh, Chris Bowman, Nicholas Cain, Andrew Cho, Tim Dawe, Max Departee, Marie Desoto, David Feng, Sam Gale, Emily Gelfand, Nile Gradis, Conor Grasso, Nicole Hancock, Brian Hu, Ross Hytnen, Xiaoxuan Jia, Tye Johnson, India Kato, Sara Kivikas, Leonard Kuan, Quinn L’Heureux, Sophie Lambert, Arielle Leon, Elizabeth Liang, Fuhui Long, Kyla Mace, Ildefons Magrans de Abril, Chris Mochizuki, Chelsea Nayan, Katherine North, Lydia Ng, Gabriel Koch Ocker, Michael Oliver, Paul Rhoads, Kara Ronellenfitch, Kathryn Schelonka, Josh Sevigny, David Sullivan, Ben Sutton, Jackie Swapp, Thuyanh K Nguyen, Xana Waughman, Joshua Wilkes, Michael Wang, Colin Farrell, Wayne Wakeman, Hongkui Zeng, John Phillips, Stefan Mihalas, Anton Arkhipov, Christof Koch, and Shawn R Olsen

bioRxiv posted 17 February 2023

[Abstract] [PDF]

 

Dual credit assignment processes underlie dopamine signals in a complex spatial environment

Timothy Amos Krausz, Alison E. Comrie, Loren M. Frank, Nathaniel Douglass Daw, and Joshua D. Berke

bioRxiv posted 16 February 2023

[Abstract] [PDF]

 

ArMo: An Articulated Mesh Approach for Mouse 3D Reconstruction

James P. Bohnslav, Mohammed Abdal Monium Osman, Akshay Jaggi, Sofia Soares, Caleb Weinreb, Sandeep Robert Datta and Christopher D. Harvey

bioRxiv. posted 18 February 2023

[Abstract]

 

Learning rules for cortical-like spontaneous replay of an internal model

Toshitake Asabuki and Tomoki Fukai

bioRxiv posted 18 February 2023

[Abstract] [PDF]

 

Rate versus synchrony codes for cerebellar control of motor behavior

David J Herzfeld, Mati Joshua, and Stephen G Lisberger

bioRxiv posted 18 February 2023

[Abstract] [PDF]

 

Distinguishing examples while building concepts in hippocampal and artificial networks

Louis Kang and Taro Toyoizumi

bioRxiv posted 21 February 2023

[Abstract] [PDF]

 

Neural dynamics in the rodent motor cortex enables flexible control of vocal timing

Hippocampal remapping induced by new behavior is mediated by spatial context

Samuel J Levy and Michael E Hasselmo

bioRxiv posted 21 February 2023

[Abstract] [PDF]

 

Learning-induced reorganization of neuronal subnetworks in the primary sensory cortex

Yexin Yang, Hao Shen, and Sung Eun Kwon

bioRxiv posted 21 February 2023

[Abstract] [PDF]

 

Emergence of universal computations through neural manifold dynamics

Joan Gort Vicente

bioRxiv posted 22 February 2023

[Abstract] [PDF]

 

Single neurons in the human medial temporal lobe flexibly shift representations across spatial and memory tasks

Thomas Donoghue, Runnan Cao, Claire Zhixian Han, Cameron Monteith Holman, Nicholas J Brandmeir, Shuo Wang, and Joshua Jacobs

bioRxiv posted 23 February 2023

[Abstract] [PDF]

 

Repeated passive visual experience modulates spontaneous and novelty-evoked neural activity.

Suraj Niraula, William Hauser, Adam G Rouse, and Jaichandar Subramanian

bioRxiv posted 22 February 2023

[Abstract] [PDF]

 

Single-neuron spiking variability in hippocampus dynamically tracks sensory content during memory formation in humans

Leonhard Waschke, Fabian Kamp, Evi van den Elzen, Suresh Krishna, Ulman Lindenberger, Ueli Rutishauser, and Douglas D. Garrett

bioRxiv posted 23 February 2023

[Abstract] [PDF]

 

Striatal ensemble activity in an innate naturalistic behavior

Samuel Minkowicz, Mychaela Alexandria Mathews, Felicia Hoilam Mou, Hyoseo Yoon, Sara Nicole Freda, Ethan S Cui, Ann Kennedy, and Yevgenia Kozorovitskiy

bioRxiv posted 23 February 2023

[Abstract] [PDF]

 

Cortical cell assemblies and their underlying connectivity: an in silico study

Andras Ecker, Daniela Egas Santander, Sirio Bolanos Puchet, James B. Isbister, and Michael W. Reimann

bioRxiv posted 24 February 2023

[Abstract] [PDF]
 

Hippocampal engrams generate flexible behavioral responses and brain-wide network states

Kaitlyn E Dorst, Ryan A Senne, Anh H Diep, Antje R de Boer, Rebecca L Suthard, Heloise Leblanch, Evan A Ruesch, Sara Skelton, Olivia P McKissick, John H Bladon, and Steve Ramirez

bioRxiv posted 24 February 2023

[Abstract] [PDF]

 

Replay as a basis for backpropagation through time in the brain

Huzi Cheng and Joshua Brown

bioRxiv posted 24 February 2023

[Abstract] [PDF]

 

Modality of odor perception is transmitted to cortical brain regions from the olfactory bulb

Michelle F Craft, Andrea K Barreiro, Shree Hari Gautam, Woodrow Shew, and Cheng Ly

bioRxiv posted 27 February 2023

[Abstract] [PDF]

 

Recurrent connectivity structure controls the emergence of co-tuned excitation and inhibition

Emmanouil Giannakakis, Oleg Vinogradov, Victor Buendia, and Anna Levina

bioRxiv posted 28 February 2023

[Abstract] [PDF]

 

Causal inference during closed-loop navigation: parsing of self- and object-motion

Jean-Paul Noel, Johannes Bill, Haoran Ding, John Vastola, Gregory C DeAngelis, Dora E Angelaki, Jan Drugowitsch

bioRxiv posted 30 January 2023

[Abstract]

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